Top Operations and Supply Chain MS Dynamics Apps

Digital Transformation in Operations and Supply Chain

The world of operations and supply chain management has changed dramatically in recent years. With global supply chains growing ever more complex, business leaders in every industry are looking to streamline workflows, optimize inventory, and gain end-to-end visibility over their resources and processes. The demands are high: faster delivery, better quality, cost savings, and agility to respond to changing markets. Microsoft Dynamics 365 offers a robust foundation for these needs, but it’s the ecosystem of specialized apps that truly elevates what companies can achieve.

Within the Dynamics 365 platform, organizations find core modules for everything from procurement to warehouse management. Yet, to reach peak efficiency, the smartest businesses rely on advanced D365 supply chain apps and D365 operations apps tailored to their industry, size, and unique challenges. These solutions support automation, data-driven decision-making, and integration with external systems, helping teams overcome bottlenecks and seize opportunities for growth.

From employee payroll to predictive maintenance and logistics automation, the right apps transform your Dynamics 365 investment into a competitive advantage. This guide highlights the most trusted, innovative, and practical apps for operations and supply chain leaders using Microsoft Dynamics 365. Each app is carefully selected to deliver real value, drive efficiency, and help your organization thrive in a connected, fast-paced marketplace.

Whether your organization is focused on streamlining logistics or optimizing daily processes, MS Dynamics apps for supply chain and MS Dynamics apps for operations provide targeted solutions to help you achieve your goals more efficiently.

How We Selected These MS Dynamics Apps for Supply Chain

Choosing the best operations and supply chain tools for Dynamics 365 involves more than reviewing features. For this list, we used strict criteria to identify only those solutions that deliver outstanding performance, security, and integration. Our selection process focused on D365 apps for supply chain and operations that:

• Provide seamless, native integration with Dynamics 365 finance and operations supply chain management modules
• Are proven in real-world deployments and endorsed by positive user reviews
• Enable automation, process optimization, and real-time reporting
• Scale effectively for both small businesses and large enterprises
• Support regulatory compliance and data security
• Offer robust support and regular updates from reputable vendors
• Address core use cases in operations, inventory, production, maintenance, logistics, procurement, and financials.

With these criteria, we present ten apps that can transform your Dynamics 365 environment and help you meet the demands of modern operations and supply chain management.

1. Employee Pay Slip

Ensuring timely, accurate payroll is fundamental for any operations team. Employee Pay Slip is an essential app for automating the generation and delivery of pay slips directly from your Dynamics 365 system. The app eliminates manual payroll processes and ensures that every employee receives detailed, accurate salary information on time, every pay cycle.

This tool supports various payroll formats, handles multiple currencies, and integrates directly with HR and finance modules for seamless data flow. HR and payroll teams save hours each month by automating repetitive tasks and ensuring compliance with tax and labor regulations. Employees can access their pay slips securely via a self-service portal, boosting satisfaction and trust.

Key Features:

• Automated pay slip generation and distribution
• Multi-currency and multi-format support
• Secure employee self-service access
• Integration with HR and finance modules

Pricing: Pricing is tailored to the size of your workforce and the level of support needed. Contact the vendor directly for a custom quote.

Link: Employee Pay Slip

2. Bluestar Dynamics PLM – Engineering

Product lifecycle management is a cornerstone of efficient operations, particularly in manufacturing- and engineering-focused organizations. Bluestar Dynamics PLM – Engineering brings robust PLM capabilities directly into your Dynamics 365 environment, connecting product data, CAD drawings, and BOMs (Bill of Materials) to every stage of the process.

This app streamlines collaboration between engineering, production, procurement, and quality teams. By providing a single source of truth for all product-related information, companies can avoid errors, reduce time-to-market, and maintain compliance with industry standards. Real-time updates ensure everyone is working with the latest designs and data, eliminating costly miscommunications.

Key Features:

• Centralized product data management (PDM)
• Seamless integration with CAD tools and Dynamics 365
• Workflow automation for approvals and change requests
• Version control and full audit trails

Pricing: Pricing varies by number of users and integration needs. Reach out to Bluestar Dynamics for a tailored proposal.

Link: Bluestar Dynamics PLM – Engineering

3. EvergreenWorx Maintenance Pro – CMMS

Downtime is the enemy of productivity. EvergreenWorx Maintenance Pro – CMMS helps organizations proactively manage equipment maintenance, repairs, and inspections. Integrated with your Dynamics 365 operations tools, this computerized maintenance management system (CMMS) schedules preventive tasks, tracks work orders, and manages spare parts inventory.

With automated alerts and mobile access, maintenance teams can respond quickly to issues, reducing downtime and extending asset life. Analytics help operations leaders spot trends, optimize maintenance schedules, and improve resource allocation. This is a critical app for any business that relies on complex machinery or facilities.

Key Features:

• Preventive and predictive maintenance scheduling
• Mobile work order management
• Asset and spare parts tracking
• Maintenance analytics and reporting

Pricing: Free trial available. Starting at $5.00/user/month. Request a consultation with EvergreenWorx for a quote.

Link: EvergreenWorx Maintenance Pro – CMMS

4. Use Dynamics

Use Dynamics is designed to make ERP adoption simple for growing businesses. It provides guided workflows and role-based dashboards that help new users quickly become productive within Dynamics 365. By automating routine operations and standardizing best practices, Use Dynamics reduces errors and speeds up training.

Teams benefit from checklists, alerts, and templates for core processes such as order fulfillment, inventory tracking, and procurement. Real-time progress tracking helps managers monitor performance, while built-in documentation makes onboarding seamless.

Key Features:

• Guided user onboarding and training
• Automated workflow templates
• Role-based dashboards and alerts
• Documentation and best practice libraries

Pricing: Free.

Link: Use Dynamics

5. Transportation Management System (TMS)

Logistics and transportation can make or break supply chain success. Transportation Management System (TMS) for Dynamics 365 enables end-to-end planning, execution, and tracking of shipments across multiple carriers and modes. The app features automated route planning, real-time shipment tracking, and integrated freight billing.

Operations leaders can optimize carrier selection, manage capacity, and monitor delivery KPIs, all from within the Dynamics environment. With real-time analytics and alerts, companies can ensure on-time delivery, reduce costs, and enhance customer satisfaction. To further optimize logistics, companies are increasingly pairing their TMS solutions with a Dynamics 365 geo mapping app to enhance route planning and delivery accuracy.

Key Features:

• Multi-carrier and multi-modal transportation management
• Automated route and load optimization
• Real-time shipment tracking and exception alerts
• Freight cost analysis and reporting

Pricing: Free start. Pricing is determined by shipment volume and integration needs. Contact the vendor for a custom estimate.

Link: Transportation Management System (TMS)

6. Pagero E-invoicing

E-invoicing is essential for digital, compliant, and efficient financial operations. Pagero E-invoicing automates the creation, delivery, and archiving of electronic invoices directly from Dynamics 365, supporting multiple formats and compliance with global tax regulations.

The app integrates seamlessly with your ERP and AP/AR modules, eliminating manual entry and reducing errors. Automated validation and tracking of invoices accelerate cash flow and simplify audits. Pagero’s global network ensures connectivity to customers and authorities worldwide. Combined with a robust Microsoft Dynamics inventory management app, Stripe helps organizations maintain a clear, real-time picture of cash flow and stock levels across the business.

Key Features:

• Automated e-invoice creation and delivery
• Compliance with international e-invoicing standards
• Real-time invoice tracking and status updates
• Integration with AP/AR and tax modules

Pricing: Free.

Link: Pagero E-invoicing

7. ExFlow – Accounts Payable Automation

Managing supplier invoices manually is inefficient and prone to errors. ExFlow automates accounts payable within Dynamics 365, capturing, matching, and approving invoices with minimal manual intervention. The result is faster processing, fewer exceptions, and greater control over cash flow.

With ExFlow, AP teams gain real-time visibility into invoice status, can automate approval workflows, and maintain a full audit trail for compliance. Integration with procurement and finance ensures data consistency and transparency.

Key Features:

• Automated invoice capture and matching
• Approval workflow automation
• Real-time AP dashboards and analytics
• Full audit trails for compliance

Pricing: Free trial. Pricing is tailored to invoice volume and process complexity. Contact Signup Software for a demo and personalized quote.

Link: ExFlow – Accounts Payable Automation

8. Visual Production Scheduler

Production scheduling is a make-or-break activity in operations management. Visual Production Scheduler brings drag-and-drop Gantt chart scheduling to Dynamics 365, allowing planners to allocate resources, manage production orders, and optimize capacity, all in a visual interface.

By visualizing bottlenecks, planners can adjust schedules proactively and maintain on-time delivery. The app integrates with inventory and procurement modules, providing real-time data for informed decisions. When paired with other Microsoft Dynamics 365 supply chain apps, Visual Production Scheduler ensures a truly coordinated approach to manufacturing and fulfillment.

Key Features:

• Visual Gantt chart scheduling
• Drag-and-drop resource allocation
• Integration with production, inventory, and procurement
• Bottleneck analysis and what-if planning

Pricing: Free start. Pricing depends on user count and manufacturing complexity. Netronic offers quotes after a free demo.

Link: Visual Production Scheduler

9. Stripe in Business Central

Payments are the lifeblood of business. Stripe in Business Central enables seamless payment processing and reconciliation within Dynamics 365. Customers can pay invoices via credit card or online wallets, while finance teams benefit from automated reconciliation and reporting.

Integration with sales, finance, and inventory modules ensures that payment data flows smoothly across the organization. The app supports recurring payments, refunds, and payment status tracking.

Key Features:

• Integrated online payment processing
• Automated payment reconciliation
• Support for multiple payment methods and currencies
• Real-time payment status updates

Pricing: Free start. Stripe charges a transaction fee based on payment volume. Contact the app provider for details on implementation and support costs.

Link: Stripe in Business Central

10. Dynaway EAM

Enterprise asset management is critical to operations and supply chain success. Dynaway EAM provides a comprehensive solution for tracking, maintaining, and optimizing physical assets within Dynamics 365. It covers preventive maintenance, asset lifecycle management, and work order automation, with robust analytics for decision support.

Mobile access empowers technicians in the field, while seamless integration with supply chain, inventory, and finance modules ensures all teams are aligned. This app is ideal for organizations with large fleets, plants, or distributed assets.

Key Features:

• Complete asset lifecycle management
• Mobile work order management
• Preventive and predictive maintenance scheduling
• Asset performance analytics

Pricing: Free.

Link: Dynaway EAM

Conclusion: Unlocking Efficiency with the Best Microsoft Dynamics 365 Supply Chain and Operations Apps

Today’s business environment is fast-paced and unpredictable, but it’s also full of opportunities for organizations willing to embrace digital transformation. By leveraging the right Dynamics 365 operations and supply chain solutions, companies are finding new ways to simplify processes, respond to market changes, and build lasting competitive advantage.

The apps covered in this guide showcase just how diverse and innovative the Microsoft Dynamics 365 ecosystem has become. Whether you’re looking to automate payroll, modernize equipment maintenance, improve scheduling, or streamline transportation, there’s a tool designed to help. Integrating these solutions means you can make better decisions with real-time data, minimize manual work, and keep teams aligned across departments and locations.

The best part is that these apps don’t require you to overhaul your entire operation overnight. Many organizations start by addressing a key pain point, like automating accounts payable or optimizing their transportation network, and then expand into other areas as their needs evolve. Over time, this approach leads to a fully connected operation, where data flows seamlessly and everyone has the insights they need to do their job more effectively. The ecosystem of Dynamics 365 apps for supply chain is especially valuable for organizations seeking to connect procurement, inventory, logistics, and production workflows under one digital roof.

Ultimately, investing in Microsoft Dynamics supply chain apps and MS Dynamics solutions for operations is more than just a tech upgrade, it’s a strategic decision to empower your team, delight your customers, and future-proof your business. In a world that never stands still, having the right tools at your side means you’re ready for whatever comes next.